NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224502_10367110

Scaffold Ga0224502_10367110


Overview

Basic Information
Taxon OID3300022218 Open in IMG/M
Scaffold IDGa0224502_10367110 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)558
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.03Long. (o)-122.37Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y

Sequences

Protein IDFamilyRBSSequence
Ga0224502_103671101F001655GAGGMKQPENDHTKHFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWYYKEELGMFEHFEASVHRTAKALKESYTYWPEGYVHV
Ga0224502_103671102F002858AGGAGMAIDEKSIYVVDGGDYSIYCLGYTQARAVTNDIMRLDPWGGIPFVLRKDLELSLDDRGNVVMSKSTLDKILILASDELPESEGDA

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