NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224505_10141898

Scaffold Ga0224505_10141898


Overview

Basic Information
Taxon OID3300022214 Open in IMG/M
Scaffold IDGa0224505_10141898 Open in IMG/M
Source Dataset NameSediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_4_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)930
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.05Long. (o)-121.934Alt. (m)Depth (m)11
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022658Metagenome / Metatranscriptome213Y
F058142Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0224505_101418981F022658N/AKSDQTLIRLDTFGAILVFYESLVTDVSNMNEVDLQNYEFAKNRAQNEWTKAIELMNWYDLYDNAPEGPTTKLEENWTADVDFFNNDRRYF
Ga0224505_101418982F058142AGGAGMAANVLNAPLVTTSDIIAVLQRDIPKAWAIPIYDDFPSDSDIVRYGIYVSDVHTIERNPHQLGVQYCGTIYHAYDGFRVVYVSYQDDPYNIDLNAIIANLVVSVKSNGQQLFDGYFERNFDQDLSYGSNAEKHTWQFRLLRLEFNT

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