Scaffold Ga0224505_10049190

Overview

Basic Information

• Taxon OID: 3300022214
• Scaffold ID: Ga0224505_10049190
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_4_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1746
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.05
  • Long. (^o): -121.934
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F009503	Metagenome / Metatranscriptome	317	Y
F034410	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224505_100491903	F009503	AGGAG	METIQFECRKCKKVTKQLIHKVTDNLPDGVEVIQCTKCEVMGIAQIRAFNADL
Ga0224505_100491904	F034410	AGGTGG	MEKSFHDLIAQDAQSIGSEWVVAKYLNYEFDPFLQKGKFKADVGSHFEVRWTKYASGQLIIHEYDRTDDVAILVTGESPHFHIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGNNPV
Ga0224505_100491905	F000403	N/A	PNMASAYQRRNLEATNMSDFIEIINPRTMTCKLMENGVIVAEYKVEQCDKCSSLVKFDEFGYQKGYGNEKIIWFCAGCR