Scaffold Ga0224499_10169222

Overview

Basic Information

• Taxon OID: 3300022206
• Scaffold ID: Ga0224499_10169222
• Source Dataset Name: Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 745
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.7
  • Long. (^o): -122.34
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005454	Metagenome / Metatranscriptome	400	Y
F022015	Metagenome / Metatranscriptome	216	Y
F036489	Metagenome / Metatranscriptome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224499_101692221	F036489	N/A	MNKNFKNVVFTTMIGMCTFQIGVIFKQNQVNQVNEWRESIVESYILRTDNGTMLGYNINILDDERLFT
Ga0224499_101692222	F005454	N/A	MRIIKHFNPHFPERETYKCTMRYTTKFGTLDEVNQWRDDQLKNEDYYKSLEESNTKAAGELYKTLNYKSD
Ga0224499_101692223	F022015	N/A	MYYQSKSNITWKQAFAEVNASVLKHEIICAIASEVAGKPVENLIGFTDEQRESVWCDYYNTTELCG