NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196901_1007863

Scaffold Ga0196901_1007863


Overview

Basic Information
Taxon OID3300022200 Open in IMG/M
Scaffold IDGa0196901_1007863 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4625
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016669Metagenome / Metatranscriptome245Y
F021308Metagenome / Metatranscriptome219Y
F034185Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0196901_100786310F016669N/AMTLDNKISFISGFVFTALSTVSLMGVAQAAMVGLVGGFFGLLGKELYYFVKKKINEKVN
Ga0196901_10078633F034185N/AMTHDLLSYKEARIEALLNEINRLELENEKLTTYVFELCDKDCPAEYKKIVKIDVFKG
Ga0196901_10078639F021308N/AMRKLIEFGIFKYIELKLWLQDKKNGTTFDMFKFGLFWMLIMILASILLGKII

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