Scaffold Ga0196901_1002073

Overview

Basic Information

• Taxon OID: 3300022200
• Scaffold ID: Ga0196901_1002073
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9799
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057204	Metagenome	136	Y
F100685	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_100207312	F100685	GAGG	MTRRYCDTGRIECPCLPECIWDCKYDTATVEVVRKIKPYPAIPPDIEPVPEKWHTVGTVMLTGIMVVLAVACILIFFTGVWIWSLLI
Ga0196901_10020735	F057204	GAGG	MEQRKLCEKCGNSESRIQRWNFTAEDFEKFRRLNERAGQWMFHGAEAKGGWVRVSFRQDFCTKTDLHCIPEKVLHHCHMFVDRDAATPAESVESTPWWELT