Scaffold Ga0196901_1000277

Overview

Basic Information

• Taxon OID: 3300022200
• Scaffold ID: Ga0196901_1000277
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27738
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (48.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.8455
  • Long. (^o): -76.4191

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F067537	Metagenome / Metatranscriptome	125	N
F087066	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196901_100027712	F001018	AGGA	VIIVHFKTLKQTSKNFSRTMTQITQAKLNELSVIKLYEHYGALERSLPLLTPESQELAKAELEACANLRSEKVDRIYYAMASHEDALERIKKEGDLITQAKRHHEAQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKDLTVEVNSDPEFWHTEERANYCIEEEVTTTKRVVLRSMSGKVLSERTEPKTTTKVLPNLDAIRDAYQNGKQLPLGVRVTQEYSVRSKRIFGEPRMDMVASEYPGQLLPEDSSTD
Ga0196901_100027730	F087066	AGGAG	MTEQQLCFLRGCCATILAFAVTGLLASIFLASDEPKDTSKFEVLDHYQGCSVIRYTDPTSRWHYFLKCS
Ga0196901_100027731	F067537	AGGCGG	VHLVFLNTTQLIPTTAITMPTKRQFDYKIGDRVAERPKPHGIYTNNQETRQRIAQYRSQRYGEVVGINYKKNSSGAKQRFLLVRWDHLPSPTEHATARICPVSELERLTKEVIVPGE