Scaffold Ga0196905_1007065

Overview

Basic Information

• Taxon OID: 3300022198
• Scaffold ID: Ga0196905_1007065
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3857
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009141	Metagenome / Metatranscriptome	322	Y
F021513	Metagenome / Metatranscriptome	218	Y
F022190	Metagenome / Metatranscriptome	215	Y
F067695	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_10070652	F067695	AGGA	LGYNVGDIPFELLAVVRVSWYRKGMAYEVEEYQIEESDDAQNQFHYIVGTALRQGADVCVLTQYEPAALGVPE
Ga0196905_10070654	F022190	AGGAGG	VSQVQSIEELRFEGDHLVVDAVVDDMVVRYAQTALEPAEWGPALCRGTLYFSDEDLIPATDAELRAMLSERVDDWAPVDTSDWDV
Ga0196905_10070656	F009141	AGGA	MTENSMVPFYRSYLLNGRTIYLDKLSELSDSELHLLNVDTMAALQEARHEYEAIENKQSEEAGPAYRRLKVAGYFQAAIKLELENG
Ga0196905_10070657	F021513	N/A	MNMYILSEAQFDQVIKALDAARFALDTCQHVELDLTNPKQTIPLPAGEKIVRTKAVRQSQSKTRKSSRKGKRGVAVLTEPKVLEIKRQLAAGGKSVGKIAKEFGVHPTTVNCIKWGKTWKHVQLQQDAVEVAA