Scaffold Ga0196905

Basic Information
Taxon OID	3300022198 Open in IMG/M
Scaffold ID	Ga0196905_1000358 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022198 Open in IMG/M

Scaffold ID

Ga0196905_1000358 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18609
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (55.88%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

18609

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (55.88%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F006785	Metagenome / Metatranscriptome	364	Y
F009141	Metagenome / Metatranscriptome	322	Y
F017122	Metagenome / Metatranscriptome	242	Y
F021513	Metagenome / Metatranscriptome	218	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196905_100035810	F006109	N/A	MTRYVVMVEDRWVTVVYGPGKGIGFTRSKEDASSWVTYERAVAAARVVAECTNSHAAVHCVEEPVYPRSWK
Ga0196905_100035812	F004722	N/A	MSRARTGREIMLEWLQREIRQAKTADLQRAAAFLEWARGIRKGCAKQRGGARVAQANAWRKRVDEDVRW
Ga0196905_100035817	F021513	N/A	MKMYILSATQFDQIIKALDDARFALDTYQCIDLDMSGPRQTIPLPAGERLVRTSDVRKPKSQSKTRKSRRKGRAVLTEAKVLEIKRQLAAGGKSVSKIAREFGVHSTTINCIKFGKTWKNVQLQQPAKVVVD
Ga0196905_100035818	F009141	AGGA	MTDAATVPFYRSYLLGGKNIYLDKLSELSDNELNLLNIETLAALEEARREHDAFDNKQGEEAGPAYRRLKIAGYFQAAIKLELQS
Ga0196905_100035822	F001841	GGA	MGQFTPPSFFLGFMRVAAWLLWRDPVKKEPPQPKRPRKPTLGYTVGDIPYELLAVVRVSWYRKGVAYEVEEYQIEESDDAPAQFHYIVGTALRQGADVCVLTQYQPAALGVPE
Ga0196905_100035828	F006785	N/A	MANGEWATQRERKDLARDQREAEREALRLEKRHLRDLRWAVERSTLEESDWADLLSLQQAHGKEGPLQLWRELVPYWRDCQRLNDGADIPPELFPQGTGLFPRTPQAAKAPVNRVKASPGSPRKKRSDAGKAQPSRKVRTPQG
Ga0196905_10003588	F043896	GGAG	VSTQIADWARQCWGEVIVDQNRVDLLEKLYFWDGRDKKDHPLHDTYTGLYQKYTAS
Ga0196905_10003589	F017122	N/A	MEVVPFQEQLDPQLNLGEGVSRTSSDKTDLFELKVWLPGQGAMRDLVRAESLQQAITFAENRYPNCRVEVPAAAAKKPKLARAKNGPREAARKRLKLVEKKREHTDC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0196905_1000358

Overview

Ecosystem & Geography

Associated Families

Sequences