NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196905_1000208

Scaffold Ga0196905_1000208


Overview

Basic Information
Taxon OID3300022198 Open in IMG/M
Scaffold IDGa0196905_1000208 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23540
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001360Metagenome / Metatranscriptome714Y
F021091Metagenome / Metatranscriptome220Y
F025678Metagenome / Metatranscriptome200Y
F073185Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0196905_10002081F001360AGGAGMSLAKFRKVHAKTGAGRFVVSEGIAPAAYLLPHPGLPTWYLDSEDDRFEIVLTKGTILSVVADSNGDARVVPANGTSGSVTWGDTMSGWDPLDGATPSTTTGSTDTVAVAAYSKPIGCAQYDLYRPFDKGTSQGAGFITHGYVEYPMVDGVNADVAVGSLVRADHMGRPVALSNADAGDYPWLQVGKVIEVEKFATNFDDGLLSYMQLPSDPGALKTVFELTRSGAYSGKLGIRANLDVNNVIGAFRVNLTL
Ga0196905_100020818F021091N/AMNDWKNYIDKNGDFQLANFLYKNINELMKHSLDMGTLLSNDSQKLRAYKEQTKKLFKNKWLNIAEVLEYFEIIEKCVCYSEEKEIYCDICKGARYKISSYLSPDEMREVSTFVNAVQDAEVQLKLQKGLMKLLEEI
Ga0196905_10002083F025678GAGGMSFDFIESFTVEFPDLTESKYNFSENFNANHGLIIEVAAIHERINSKL
Ga0196905_10002087F073185AGGAMSEENTQEQKSEFAIEIKISDKNLSYRSDFPESETIFWLEAVKGLIIKNTFERAGIEQK
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Institute for Fundamental Biomedical Research
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