Scaffold Ga0222625_1688125

Overview

Basic Information

• Taxon OID: 3300022195
• Scaffold ID: Ga0222625_1688125
• Source Dataset Name: Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1296
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9201
  • Long. (^o): -106.9487

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039544	Metagenome / Metatranscriptome	163	N
F057160	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222625_16881252	F057160	AGGAG	MNRKSLVASFGLVACLAAALSAQAPSSNGKVDQKAVQSIRVKVIGCVAGDAEAGHYILTGAFLSGDDVPSTVGTAGKIGSGKDVSFENSPSYDLIGDRLKAHVGHEVEIIGITSDARLNNRDALSSAIGSSKNEKMTLTWIR
Ga0222625_16881254	F039544	N/A	TKVSNVSTFQVPIHATLNGKPVRLLALGEQEGKSPVYLAVKQDGKSEWESISEFQIIDPNALPVTTEALRHLSLTTVK