Scaffold Ga0181354_1167032

Overview

Basic Information

• Taxon OID: 3300022190
• Scaffold ID: Ga0181354_1167032
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 678
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F029021	Metagenome	189	Y
F069714	Metagenome	123	N
F103146	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181354_11670321	F103146	GAG	MGEPRYLMGDDYALNGVEGEEEIGDAGLPDRMWEDED
Ga0181354_11670322	F029021	AGGAG	MKDLCQFCGWEIARPDWYHRYNGKLICDNCVMDTMSEREREQANG
Ga0181354_11670323	F069714	GAGG	MKVEIKESYMPEYTKAITFECEGKEYLAEVYLGKHCSDYTLYEGNKRLEDKPAWLEKAEQEDPDFSFMFFIDNLAWEYEQRKESV
Ga0181354_11670324	F006842	N/A	RTNKGVCMKATPVICGDHLTLITECGCLDYLREIESSAKRLIQLTKEREEMK