Basic Information | |
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Taxon OID | 3300022190 Open in IMG/M |
Scaffold ID | Ga0181354_1046041 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1450 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010817 | Metagenome / Metatranscriptome | 298 | Y |
F014229 | Metagenome / Metatranscriptome | 264 | Y |
F091423 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181354_10460411 | F014229 | N/A | TNTGKVDVATSVENTLPYVKPAVVLACTVVLDQATSGNDRIEKAKMINNVAAIVEALTVGTAPTPAQLQKALNDYLPSEKTHWANYVTVIKDLYAQQFARLDGNGVLAAKVLNAIASGCKDATASYVE |
Ga0181354_10460412 | F091423 | GAG | MPTGILTAILSAVSGIFSAINNVFGAKNTKEMKDRQEAQKEVDHQSGIEHAVKDKDLEEARKHISS |
Ga0181354_10460413 | F010817 | N/A | VTPNKIQDDKSSYDATTPKQYDKDNGGLISFIGEDALITRQARERYNNLIKMYRIKFKKEKAIDLTEDSGVKSYKDNFGNELFLIDSEHLVYFGVLNSWLKEKVSQDNILDKTIDKINN |
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