NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196899_1038823

Scaffold Ga0196899_1038823


Overview

Basic Information
Taxon OID3300022187 Open in IMG/M
Scaffold IDGa0196899_1038823 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1623
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019467Metagenome / Metatranscriptome229Y
F035291Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0196899_10388231F035291GGAMATTHKASPALLERIDRLAGCSGHWILIRDGEPETDCSHQWHQSPDDHLATCLAEHWRGVSLGFVPTYCGYSDYANTGLVGLSNFRVLTDPASTPDPHDGILTVGYGWNGAGVVLDLLRVPADVLEAVEALEAYPLISEDDHSQLECDGINADWSNESISDRVRTLQQLGLCIFAARDDSAPWRDGFDRLRDSIVENLNAYPTA
Ga0196899_10388233F019467GGAGGVSGGEWATQRELKRSREEEREAKRRLAIEWADKLWLAQNHPCSDDTLAWLSEKRADASKIGSSRWHLETLPELHKRQQQLRQAAAFQEVLDRAKVSAQTLTAEQVLAAGGFPQNPQVEPVEKQKAPRTNKGKRQPSRRKRTSKTANNAPVQK

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