Scaffold Ga0196899_1004311

Overview

Basic Information

• Taxon OID: 3300022187
• Scaffold ID: Ga0196899_1004311
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6211
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022637	Metagenome / Metatranscriptome	213	Y
F053234	Metagenome / Metatranscriptome	141	Y
F058104	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196899_100431111	F058104	N/A	MTTFSPTYKSYVYDIEYEPKDYIGALDWFNIARCARERMTEYCQDIHRWRGERRTFYSSLQAMNIDTKQLLD
Ga0196899_10043112	F022637	AGG	MSRTYRKQPRYNQFRNPQTFNELKQVRVSNDYLDNEYPVSTRNRYIPTAWDDITASSIYQNDHHTK
Ga0196899_10043116	F053234	N/A	MTVTIDRKIATGLIGRAKTGNELLIVLDMIIDSFTKSTKPEPTTEEIPF