Basic Information | |
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Taxon OID | 3300022187 Open in IMG/M |
Scaffold ID | Ga0196899_1000966 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14540 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (38.10%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED167 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F078662 | Metagenome / Metatranscriptome | 116 | N |
F097257 | Metagenome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0196899_100096619 | F078662 | N/A | MGDLRSFLRLQTDAWLLTLKERVADAVLSGAVTTSFSNASQSGTRELVLPTEELASQLTDVLHEKGLATGSKPARMTFARFSR |
Ga0196899_10009669 | F097257 | AGG | MSKILKGTAFSYGSRTGGGVIQVRVSDDSGVKFSGEMYASEIRLSYEGDQATANNSDGEVVSVVSFNHRKVLNLTGIVLATSQTPNAGGVDSVTNANLAFSAPFKVGCDLWISYGSNNEWPEVNKSGSAGWGSTSNPGGVHGAPSYGDFHITGAEKTRSAGNFAEWSITAVEHIPIDYDGANNADDSNN |
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