NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1016087

Scaffold Ga0181353_1016087


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1016087 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1940
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025977Metagenome / Metatranscriptome199Y
F048942Metagenome / Metatranscriptome147Y
F071153Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0181353_10160871F025977N/AMTEIFIKIIQQGLTPNAYYVLHCIKDKIVPHSSINKDLECKRLQSGAWLTEDLQLTDKSIIFTTEIEGYFKKSKKKTSKDLLGHNFMQNIEAYVTIFPNKKLSSGKYARVPPKNLENAFRWFFETYNYDWETIFLATQKYVNEYESKNYEYMRNSQYFL
Ga0181353_10160873F048942N/AMIKAKELKDDAILEIKVNKSFYLMTKAASFVVLQGMNIQDKGDEYFKSILTKKYEDLDDQQRTFYTLVLLLAEIERKATEENLYTEKEILEPGDEGYVAPSIQD
Ga0181353_10160874F071153GGAMFSGKFIKKNGKLTYATPQDKLAYEIFVDMISEGEVIDMFLEVSSPDHSKAQLAKVHACIRELAKESGYTFDEMKQVIKEHAGLAGKSFGDCSKSDLMLAIEACIQIGRENYNINLG

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