NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181353_1006095

Scaffold Ga0181353_1006095


Overview

Basic Information
Taxon OID3300022179 Open in IMG/M
Scaffold IDGa0181353_1006095 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2878
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002420Metagenome / Metatranscriptome560Y
F008303Metagenome / Metatranscriptome335Y
F028085Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0181353_100609511F008303GGAMIDRLILSAVLGTVGYNGLFPDPPPTPTLKEQAKEKSISAMCDRKPKSKTAKDLCRRWRERQNA
Ga0181353_10060954F028085AGGAGGMLEAIASILLTTVLLALGAILFVFVCAFIGWMIFTTQNGGDDD
Ga0181353_10060959F002420GAGGMTFRETTIKYIKDILRPKTIYEVIYAELQEAYLRKLEAETAAEYADAAIKYNARRIERLKQRLFEHAEEDV

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