Scaffold Ga0181353_1006095

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1006095
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2878
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F008303	Metagenome / Metatranscriptome	335	Y
F028085	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_100609511	F008303	GGA	MIDRLILSAVLGTVGYNGLFPDPPPTPTLKEQAKEKSISAMCDRKPKSKTAKDLCRRWRERQNA
Ga0181353_10060954	F028085	AGGAGG	MLEAIASILLTTVLLALGAILFVFVCAFIGWMIFTTQNGGDDD
Ga0181353_10060959	F002420	GAGG	MTFRETTIKYIKDILRPKTIYEVIYAELQEAYLRKLEAETAAEYADAAIKYNARRIERLKQRLFEHAEEDV