Scaffold Ga0181353_1005818

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1005818
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2931
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009331	Metagenome / Metatranscriptome	319	Y
F030018	Metagenome / Metatranscriptome	186	Y
F040531	Metagenome / Metatranscriptome	161	Y
F048001	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10058181	F030018	N/A	QVQLYGYLLSKNGYEVKTVNLVAIARDGDEKNVKVHTENYSEEVALTAMSWLEEVKAMTDLPEPEKDSNFCKSYCQYYDATEQMGCGGLKKERIVLSDLVIEDDEVDKRALHYLQLDAKIKELEAQKDSLKSSFEGTIGVTPSGVEISWTKVKGRETVDKDKVKELIGYVPVSIGDETARLNIKLSGGK
Ga0181353_10058185	F048001	AGGA	MVMEELTMSKQQTEIQYLKNEINQLRNDMRNLILVLIDLKILKVTTDENGKAVYDTGSDGKS
Ga0181353_10058188	F009331	GAG	MICENCLKAGEENTLNHVKRATHWHEKCRGCECQHKTGQGYVKQAVQKVQP
Ga0181353_10058189	F040531	GAGG	MSAQDWSRVRKAGSPKGSALAKAVSISAIISHYGGEVREGRA