Scaffold Ga0181353_1002686

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1002686
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3884
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F015570	Metagenome	253	Y
F024504	Metagenome	205	N
F029673	Metagenome	187	N
F079808	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_10026861	F079808	GGA	MKMKDELQAIYEDEENVYYCCYCLQPQGEKIGCCQENHFVEFKYLDNDCKQEIAQEILNG
Ga0181353_10026863	F024504	AGGAG	MIRKTIGVEAPYRKPDFTYQDMLLDRIKVLEALVAKLEQRIKVLEAK
Ga0181353_10026864	F015570	N/A	MNDKLDEAFDLLEFDVTDQIRNMAYLAEQRKVATGVTDGSIQRALVRDLTENLRSLPVSNDPLLIRNDVLEEVAVELAKLPFGDTAASFAAFVRAMKS
Ga0181353_10026865	F029673	N/A	MIQHLRMVAVSENTVTGMANAFDLGSEHERDIVCTLIFNMVKDLHLAQNIVDTIRVRE
Ga0181353_10026866	F004231	AGGAG	MSVEPKDFEHEICVYLEGIGECLVCFDILSPQDELDADHSDDYEVDFAVFDEQDRHISYDISKKQYNHCENKAMDEMRDITTQWHKEWEQSFD