Scaffold Ga0181353_1000045

Overview

Basic Information

• Taxon OID: 3300022179
• Scaffold ID: Ga0181353_1000045
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 24678
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009952	Metagenome / Metatranscriptome	310	Y
F019960	Metagenome / Metatranscriptome	226	Y
F083940	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181353_100004513	F009952	AGGAGG	MQTATLGRALRDAQLTLFEHRDTEFLERCRALAVEIARQQGTVCINDIRAQLRLPAETHPSVLGAVFRSKKFTAVGFTEATHKAAHARVVRVYQLAEEENNGR
Ga0181353_100004522	F019960	N/A	MAVVLMFFIVMPVLSFMYYDMWFATQAAVHEVKKMKELRRQILEERRQETIRSE
Ga0181353_10000454	F083940	AGG	VTCPHCERPHPPAKTVMVDGVELCTYSEAWRFECEVRWALKLPDKARKPRITKLDYLNGVEQQRGTEARTKLRNEMVRRYKK