NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196887_1086337

Scaffold Ga0196887_1086337


Overview

Basic Information
Taxon OID3300022178 Open in IMG/M
Scaffold IDGa0196887_1086337 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)725
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049293Metagenome / Metatranscriptome147Y
F070660Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0196887_10863372F070660N/AMVIKSFDFETKVRVGDCAPSYSRSWQLDETDGVYTLTIDGFEPEVLQVNDRELYYFITKGIKKPIKVLESRAFQQWIYAQWQSGDVWGYAPYLSKFKRDILVFGNAQWSEMDSFGD
Ga0196887_10863373F049293N/ALKPGDTLAKAPKRERKIFLDTVDLEYAERHAMSIQEMKDFKREMIIEEEITRDALMRAAQDKNETYNSPQAHYFGW

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