NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228536_1004239

Scaffold Ga0228536_1004239


Overview

Basic Information
Taxon OID3300022177 Open in IMG/M
Scaffold IDGa0228536_1004239 Open in IMG/M
Source Dataset NameEnriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.S
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5341
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.4447Long. (o)-76.485Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018395Metagenome / Metatranscriptome235Y
F020198Metagenome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0228536_10042394F018395GAGGMSSGLKLDRADTAFAEKAHELSLKNRNWLRHGSKTSAGKMDEMLFDGATVEQMAKGAKTTKASVYVHLNHLRKVHKLAVVKKDGVFRYDMERMNGKKKTVGTKKGK
Ga0228536_10042395F020198AGGAGMITIPHKKIKSREATMTYLLDPSRLITFILNLRAHLKSTQHLCQKEGLENNPRNCVHRILYNRPETLMFRRFGHICYGRGLDWEGAREMMELMLNERFMCECEMVWRLSDEQVEEIFEGIMRSK

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