Basic Information | |
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Taxon OID | 3300022177 Open in IMG/M |
Scaffold ID | Ga0228536_1000632 Open in IMG/M |
Source Dataset Name | Enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.S |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 56382 |
Total Scaffold Genes | 72 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (70.83%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New York | |||||||
Coordinates | Lat. (o) | 42.4447 | Long. (o) | -76.485 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018395 | Metagenome / Metatranscriptome | 235 | Y |
F020198 | Metagenome | 225 | Y |
F055830 | Metagenome / Metatranscriptome | 138 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0228536_100063218 | F020198 | AGGA | MVIIPHKKLKSREATMTFLLDPAQLKSFVQDLRAYLKSTQHLCQMKGCENEPRHCAHRGMYDKPEPVLFRRFNHFCTERAGLDWEACREMMEIMLEKHFLCECEMVWRLKDEQVEVRFAGNEMK |
Ga0228536_100063219 | F018395 | GGGGG | MSAGLKLDRADTAYAEKAHELSLKNRNWLRHGIGTTADKIDVMLLDGATIEQMAKGAKTTKATVSVHLTHLRKEHKLAIVKKDGVLRYDVKPVKETKKAPRKSRKTG |
Ga0228536_100063232 | F055830 | AGGAG | MKRWKDLAVHRAGCPYKGVAVYGTDAEIAKYHSGNCPGCNVQVKWEEELQEKQTASQLKP |
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