Scaffold Ga0228536_1000632

Overview

Basic Information

• Taxon OID: 3300022177
• Scaffold ID: Ga0228536_1000632
• Source Dataset Name: Enriched culture of PCE-dechlorinating microbial communities from Ithaca, New York, USA - SJ1.S
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56382
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (70.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Enriched Cultures Of Pce-Dechlorinating Microbial Communities From Ithaca, New York, Usa

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.4447
  • Long. (^o): -76.485

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018395	Metagenome / Metatranscriptome	235	Y
F020198	Metagenome	225	Y
F055830	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228536_100063218	F020198	AGGA	MVIIPHKKLKSREATMTFLLDPAQLKSFVQDLRAYLKSTQHLCQMKGCENEPRHCAHRGMYDKPEPVLFRRFNHFCTERAGLDWEACREMMEIMLEKHFLCECEMVWRLKDEQVEVRFAGNEMK
Ga0228536_100063219	F018395	GGGGG	MSAGLKLDRADTAYAEKAHELSLKNRNWLRHGIGTTADKIDVMLLDGATIEQMAKGAKTTKATVSVHLTHLRKEHKLAIVKKDGVLRYDVKPVKETKKAPRKSRKTG
Ga0228536_100063232	F055830	AGGAG	MKRWKDLAVHRAGCPYKGVAVYGTDAEIAKYHSGNCPGCNVQVKWEEELQEKQTASQLKP