NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212020_1007427

Scaffold Ga0212020_1007427


Overview

Basic Information
Taxon OID3300022167 Open in IMG/M
Scaffold IDGa0212020_1007427 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1555
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008684Metagenome329Y
F026307Metagenome198Y
F027349Metagenome195N

Sequences

Protein IDFamilyRBSSequence
Ga0212020_10074271F026307N/ASVNDCAKLFTVKNIAESLLNKNKHTIKDLIKIRKSCLYAQSVVENYKDKILEAWKDQDIKYLADLDYISLIDWKHYQEIISRRVA
Ga0212020_10074275F008684GAGGMTDKNFDTACQLADDLYFKFIDNLSDDIASEFVIDDKDNIGCTKNTQKGSELYWEIENTIKDTLDKR
Ga0212020_10074278F027349GAGMKVWNIKVTDRGGFDNYSFIQEDEPSNKQLEAIRKIYQNSGRYIPEDIEDIYVEIKGWFDKDKIPTYNQLIDNLKQHYKKI

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