Scaffold Ga0212020_1007427

Overview

Basic Information

• Taxon OID: 3300022167
• Scaffold ID: Ga0212020_1007427
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1555
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008684	Metagenome	329	Y
F026307	Metagenome	198	Y
F027349	Metagenome	195	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212020_10074271	F026307	N/A	SVNDCAKLFTVKNIAESLLNKNKHTIKDLIKIRKSCLYAQSVVENYKDKILEAWKDQDIKYLADLDYISLIDWKHYQEIISRRVA
Ga0212020_10074275	F008684	GAGG	MTDKNFDTACQLADDLYFKFIDNLSDDIASEFVIDDKDNIGCTKNTQKGSELYWEIENTIKDTLDKR
Ga0212020_10074278	F027349	GAG	MKVWNIKVTDRGGFDNYSFIQEDEPSNKQLEAIRKIYQNSGRYIPEDIEDIYVEIKGWFDKDKIPTYNQLIDNLKQHYKKI