NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213932_1057887

Scaffold Ga0213932_1057887


Overview

Basic Information
Taxon OID3300022166 Open in IMG/M
Scaffold IDGa0213932_1057887 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)571
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003497Metagenome / Metatranscriptome483Y

Sequences

Protein IDFamilyRBSSequence
Ga0213932_10578871F003497N/ANSQLPDRHARSKHGSQRSGDAALLLPVTALIRLRISAPKLIRHFYLLEAFVSERPFARPQRLFSFENHRSEVKAPDLSLRRNSELFFQPVRPCAPTLDGVHHASGDVRRPKPVAVSQAQNSQTSIQLSLPFRTLIPPDRSAQSAARSEKPTFVSGPFSLRSPKASITFDNYPLSDHRSRFATVHQAYCS
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