Scaffold Ga0213932_1003861

Overview

Basic Information

• Taxon OID: 3300022166
• Scaffold ID: Ga0213932_1003861
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2301
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9255
  • Long. (^o): -83.5226
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001145	Metagenome / Metatranscriptome	765	Y
F001219	Metagenome / Metatranscriptome	744	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213932_10038613	F001145	N/A	MTWDFFSFLLTNEEAEAFVQFNSNILETNLVNILILIGLLLYGNKVSFSVSLENRQKEIIQTIENAQKDVANASNYYYLAEKGFTQSLFWLQSWKMLYEKEKVDLVESKYKLVKTGLTETFATTETLIKNFENKSFIALQRYMILVTASKILRKFLYLSEDEQSKLIEVTISKLGGSKK
Ga0213932_10038614	F001219	N/A	MQNINIFMTFSANSFLTGALFDFDLTFVAETILFIILALVVTFVFLKPISKQLDDRAEFINYTLRKSTILLTFGYEKLSECVGLLTEEVSEMNRQLKLTRTYTNSNFEEEVLSVQKQNSKLLSKLKGDLSIKSAYLFSNVTRELISLTDSFFAKKFQS