Scaffold Ga0213929_1006071

Overview

Basic Information

• Taxon OID: 3300022154
• Scaffold ID: Ga0213929_1006071
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 1-17 MT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1032
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae → Helacdivirus → Helacdivirus borborovicinum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.9406
  • Long. (^o): -83.5607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014988	Metagenome / Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213929_10060711	F014988	AGGAG	MSISLTAITGAAQTGFTAPTYTVSADTPPSVNAKQWAVTALGGTQTGVSVHSVSDPFTVTFFRPAVLKILALANPVTGLIKNVPKNVYKVITRKGAVPYTNSQYQVNRITTTIEVAAGTDSLNPSEVRAMLSAHIGALNQQSAGLG