Scaffold Ga0224906_1013710

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1013710
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3061
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013777	Metagenome	268	Y
F038198	Metagenome	166	Y
F073669	Metagenome	120	N
F103425	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_10137102	F073669	N/A	MMTEPNMKLLEVMRDEANLCYKNGDEENGNALVESIFAQIFPGLVEAAKNDPKIIYQLIIQSNASNGVIAEHSKSILLYLKNKGVKF
Ga0224906_10137103	F103425	N/A	MTDKTYKTYNVEAKGTIRLWMDVEASSQEEAEAMADQVKERIYGEPGPWQPLYDGYTLDITSVRPEPDKSCMRPFIPNYDD
Ga0224906_10137106	F038198	N/A	MTLEKVTLKNVKVTINFDIDLDTLEHYLETKEKDKDDVMAIYDMICTHFARLGEQGEPDNIRSYFDIDLETFNLLEQQVKNDLKKSYVTDSDHPHLRRIK
Ga0224906_10137107	F013777	AGGAGG	MTMWGPTSINHFQNLHNHYLKKKHIVHVYAEPLPYSSKTSDENMWYFCMREMKDLVYVPFKFYIHPQGDFQNGYGDFCSIQKGPFDYDNMKLGEVFPVILYAHHETILTVGCVVKTSDRADIVTGEEQLALWIYYPSVENIESFDMASGHIYKD