NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1005374

Scaffold Ga0224906_1005374


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1005374 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5391
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F005491Metagenome / Metatranscriptome399Y
F011658Metagenome / Metatranscriptome288Y
F021776Metagenome / Metatranscriptome217Y
F050307Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0224906_100537410F021776N/AMTKQELELKLETLQKLLDEQNASANAYRDQIQELQKQLKDINKPKLTGLQFDELYQAIEQGIESFDFDDQDNYETDFHIDYDNRIAIESLNFHNADELLRVVYNEARELFAEADEDNNQENQD
Ga0224906_100537411F005491N/AMSAFYKDTRYNGKLVRLEDVIDEVYNRALKTIDDGLYELLNDKDDDEFYEDYKEAFPLIVEKLQKFHDLED
Ga0224906_100537412F004523GGAMSTEIRSAREALTIFKILGIKDVTTDRQRENGTTVYELPIQQMWQTLEPKPLRFATYKAGYVRNVSEYNSSPYQINKTKKVSTRTSGYAFDTKERILIHSWEDRLIYLAKFIIKNYYQKPTYLINDYVIKCLKEAYLRDYNNNPNNRLPFGDIVHPDSSPVDDIQVIINGHRYNLS
Ga0224906_10053743F050307N/AMSDKLKQTIKVFNKIKTKDNSKRIIVATLSPTVTQGSK
Ga0224906_10053749F011658N/AMETLWQKLKPEIKQELKNQEDKYPSMVKGVKIALKDNFIWSHLAIGEVRDLIYFTDLTYASLSSYDWSYGERFLLADE
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Institute for Fundamental Biomedical Research
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