NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1004314

Scaffold Ga0224906_1004314


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1004314 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6114
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028800Metagenome / Metatranscriptome190Y
F035084Metagenome / Metatranscriptome173Y
F072335Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0224906_10043144F035084N/AMSKKMSKGYDAQDRVLAGFRRAAKSSNINSAVARAMRNKKKVKPQKDEEVVFSPLALNELYNG
Ga0224906_10043146F072335N/AMRINGGLLCHSDSEWLELRRKWSSWNTMHPLDQVDWNEYYDEHRK
Ga0224906_10043148F028800N/AMKIEIENGYDGFERHVTGNIDLDGNNVYNWELDTYDGMTSIYLIDCEVRINLEFKDDLHLFNIEEEVAEEIYDEILYFVNNNGYSFIGEGFE

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