Scaffold Ga0224906_1001311

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1001311
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12183
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (64.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000802	Metagenome / Metatranscriptome	885	Y
F002490	Metagenome / Metatranscriptome	554	Y
F009691	Metagenome / Metatranscriptome	314	Y
F011578	Metagenome	289	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100131115	F009691	AGGAG	MKSELNSKDYVTFARRFVKETVATMDIEELRGIVTDRIHEEIQEGENTFGQEGAFEEMIAWNEDVFLDVAKDFQLELEGV
Ga0224906_100131116	F011578	GGAGG	MITAFFTGVAVAVPTALITMKLLNSSLFISNEELKEANSRISLIINNLDDFREERMKEKMERLGITDKLDPRLSTKIK
Ga0224906_100131123	F002490	GAGG	MEMKEVKAEIKDYVRDHYKYYGWYPYDVEVGDVVYSQQEYLDILSMTL
Ga0224906_100131128	F000802	N/A	MTIDEYKDLLLEDEINIGYDVEEDDLPEELEEESYIDSLLTTGFHAVDASEMFGEEVVGYSLY