NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224906_1000515

Scaffold Ga0224906_1000515


Overview

Basic Information
Taxon OID3300022074 Open in IMG/M
Scaffold IDGa0224906_1000515 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21494
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (76.19%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018088Metagenome / Metatranscriptome237N
F019392Metagenome / Metatranscriptome230N
F040342Metagenome162Y
F055204Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0224906_100051511F040342N/AMLKKDLNYLINTVIGQSVLDQMCQAVLFSKQQMIFEMKSNEELVAQFISKCINKGAR
Ga0224906_100051530F018088AGCAGMRNNQSKPGINWAEIEARFNNGESAYSLANDYDVSRQSITKRAKKEGWGNIQHKVKLARKVVETTTNDKKARQPTTIVPRKVDHVQKFDKDTPEVKEAILALLRDGNPKMIAAQASGVSYDSFNRWVKRDPQFASLVREAESMAVVSRLSNIAKAGKRGDWKADSWYLERTQKEIFGNNDNKNNNLAVQINIQRDNAAETIDISATGAKPVTLDD
Ga0224906_100051536F055204AGGAGMQVDMEMAAKAYAELSEQEKEIVREAVDSPLMGILAKVFGKEFVQALGSFNRPARKMDAEMRQQAARMLMR
Ga0224906_100051541F019392GGAGGMSVEPQFYEREFNGKMRDFVRITIKGMKDVFECPVRPEDLSRFPTEWEAYKKTKGKTKAKGTSLKELPAMSEPRRVELELVGIETVEQLADADVEILRNIGEPYVELQRIAELQTKSKPKIEKVHKPLNLGIPDEPIDDMPKRS
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