Scaffold Ga0224906_1000111

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1000111
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45246
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (49.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F040392	Metagenome	162	N
F089519	Metagenome	109	N
F100005	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_100011120	F006772	AGGA	VGRWMPRTGRQLVMERLNRAIQAATTGDLQRAAMFLERAREVRAGCTNQRAQARRAQATAWKKKVDSSITW
Ga0224906_100011124	F040392	N/A	MCYFMHGIYQAVTEKQIQATVRTAHHYGGSFLSKVAEAAMSADPRNRTRVLDAFPEIVAKYGPGSAFYNEYL
Ga0224906_100011128	F100005	N/A	MDRHYERPLPETITTILEDGCISISVGDFTGVVSSMHLIEPKTHQLQSAWLAREAELAHA
Ga0224906_100011135	F089519	GGA	MASQVEIQHRLSYARAMLERRIPVSSLATLLSARYFVSRSTAYEDIKAAHQEIQLSDDGPAVDENPCDPAGVLAMLQHRFELAVATGDDKQTCQLIKAMDTAKKWQGYKPQSVSPFT