Scaffold Ga0224906_1000023

Overview

Basic Information

• Taxon OID: 3300022074
• Scaffold ID: Ga0224906_1000023
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85167
• Total Scaffold Genes: 159
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 124 (77.99%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005315	Metagenome	405	Y
F007006	Metagenome / Metatranscriptome	360	Y
F020467	Metagenome / Metatranscriptome	224	Y
F033640	Metagenome / Metatranscriptome	177	Y
F037128	Metagenome	168	Y
F053555	Metagenome	141	N
F072868	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224906_1000023108	F037128	GAG	MIRRIKKPLLEFFEKQTLTDGEKSFILGCINAQKKYPQLTHRQWQIVCEIKDKHNEQVSRSEETS
Ga0224906_1000023114	F005315	N/A	MYSACASSVIPGFSHRCFKPRRSKTGTGASSEGIDHELPTTKISLLMLIISCGDSYTQGEGLEKREQAYPYLLSRSLSASVTNLAQSGASEYLITAQVEEAVKKKPDLIVIGHTSEYRWQVWDFRRNHWQGFLIANHVLQNEKYYRNWILSEQILGNTRKKTSEHQAAWHAAGMLYFSEESVVQRLWSSAVAKQILICQRAKIPVIHHSCFPHLHDELKTLTDDYVDFHLDIEKHKDPAPDKAHAGPRSHMKLTDLLRNKHQQIL
Ga0224906_1000023115	F007006	GAGG	MEVALKTELKQEISRIVDLMIQAESIRESIAELKKDIKTEYGIPVATVTKVATIVRKQNLDEEEEKWEEIKEFVDACS
Ga0224906_1000023118	F072868	AGG	MYFKLVSKNGYRDLVRNARRISISELSDSEKSEAFRELYETLKPRLGETTRTLNVEAAYAQRCTHWNQRDLADLKPVKNCRNPWLRFKREFVNALDVRNPSREVQIALAWFYQEPHRDDWIAA
Ga0224906_1000023120	F020467	AGG	MHKRPSLQEAKALLYQHSPNTMLEYEELKHSHGEFFAARFIVDIVDHYNHINNVGVING
Ga0224906_100002328	F053555	N/A	MTDDWELQANTWIDIAYSCKNTPLLPKYQYHVLDRCLRGASDIISCENTKVHSNTASLIQWCKQWSDRALDLYWSLRDQMTHERGGKPPTHRQICNARDRRNRRWFTCEHEYPLIIPKKGVRDGHWNLQEIRDWMWQYSKVTIILNSENEKLIPFTEDMDLAAKRYEDAGIVVCEHPQHLTQH
Ga0224906_10000235	F033640	GGAGG	MLISFYFQTVDGENWTEAFDSLEEAKSHFLYFMGRTYDIGSSYAVNTYGDVTCTVDGASWEQLGL