NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212024_1049187

Scaffold Ga0212024_1049187


Overview

Basic Information
Taxon OID3300022065 Open in IMG/M
Scaffold IDGa0212024_1049187 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)739
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002738Metagenome / Metatranscriptome533Y
F013517Metagenome / Metatranscriptome270Y
F045692Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0212024_10491871F045692N/AMAQITQAKLKELNVIKLYEHYAALEKSLPLLTPESQELAKAELESCANLRSEKIDRIYYA
Ga0212024_10491872F013517N/AMFESLFSAVLPVMKDLLWAAAGMLLTYVLNKVQSQFN
Ga0212024_10491873F002738N/AEYEEFFEKNVRFGAKLYLKTCNVLNEEGAGHIDFKTILDIYQEAVYTANDDCRRYQKSNNPEALKEATADIFGITPTREELMEEIQSVSAKVEALVDYISNLITVTTAGLDGIATTLDNKVD

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