Scaffold Ga0212024_1015269

Overview

Basic Information

• Taxon OID: 3300022065
• Scaffold ID: Ga0212024_1015269
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1202
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006530	Metagenome	371	Y
F021866	Metagenome	217	Y
F057326	Metagenome	136	N
F084082	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212024_10152691	F021866	N/A	IKEKEIVMEETHLQETQLEYEPIHKTDISWEQAVTKIENILNDVCSEYEKDGHPYYADVLRLHWRRILKG
Ga0212024_10152692	F084082	AGGA	MFKAMLLICSLVHGSGDERSCFEIHDTVAPYGYTTEKKCRVRVKEMADMITSIVPYPHTIKYKCENKTRSTSIEKKNIQ
Ga0212024_10152693	F057326	AGGAG	LKKRIFNNFAERTARHEITKICKELQKANKKKEDDTWFEDDPRAVKEEDYGRVYHEPTIQPFTGGYSMLADIMDKGGNNHLRYTAKHGSARDGVRYRYKKRQK
Ga0212024_10152695	F006530	GGAG	MRLIDSLIKRFEEEAVEFASAGMEDEAKDARRLASKYLEMKYNGHTHSLRSEINEK