NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212029_1035896

Scaffold Ga0212029_1035896


Overview

Basic Information
Taxon OID3300022063 Open in IMG/M
Scaffold IDGa0212029_1035896 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)703
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008665Metagenome / Metatranscriptome330Y
F017490Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0212029_10358961F017490AGGAGMAYQGSFKLKGSSTSAGAVISASNFGRAHFVRVQTQAAANTVTVKEGSDVIGTMILVTAGDSVIIEKDEAHTIETS
Ga0212029_10358962F008665AGGAMQVSRIIKEKRIIDSKSFQELSPLMKEAINDVFILIEKETGSIIDRFENAVSKVAEFHNINVEKFNDYFEKETIEQLGEK

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