Basic Information | |
---|---|
Taxon OID | 3300022053 Open in IMG/M |
Scaffold ID | Ga0212030_1000016 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 12763 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (3.45%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 37.1 | Long. (o) | -76.0972 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007114 | Metagenome / Metatranscriptome | 357 | Y |
F013571 | Metagenome / Metatranscriptome | 270 | Y |
F018086 | Metagenome / Metatranscriptome | 237 | Y |
F085360 | Metagenome | 111 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0212030_100001610 | F085360 | GAGG | MPKIKKKIVIKNCNHEAQRYCFNKGFVITLEPTGANYKVKYQRGHKAQFYMKGKEFNKEESFQAIWDLYTKIYNYDINKK |
Ga0212030_100001616 | F018086 | N/A | MSANKSYLLGDVELQLDDIKKLSQYFESILTYNSQRELVPKKDENGKELKKLKLNFSIFEEGNYGKNVSFTIPQSKEQRENKEKKRYVANGKIYYASENLQSFVQKTEKQSEQVLEMADDMPF |
Ga0212030_100001619 | F007114 | N/A | MINDAAWEKLKKQIEYHLKEDSNLTDIKINYQIKEPKYGTKNYLNLSVAVN |
Ga0212030_100001622 | F013571 | N/A | MEINLILLMPDAMMLGFQYHEPEKGFDFSEVNLYLAFFQIQFRW |
⦗Top⦘ |