Scaffold Ga0212030_1000016

Overview

Basic Information

• Taxon OID: 3300022053
• Scaffold ID: Ga0212030_1000016
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12763
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007114	Metagenome / Metatranscriptome	357	Y
F013571	Metagenome / Metatranscriptome	270	Y
F018086	Metagenome / Metatranscriptome	237	Y
F085360	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212030_100001610	F085360	GAGG	MPKIKKKIVIKNCNHEAQRYCFNKGFVITLEPTGANYKVKYQRGHKAQFYMKGKEFNKEESFQAIWDLYTKIYNYDINKK
Ga0212030_100001616	F018086	N/A	MSANKSYLLGDVELQLDDIKKLSQYFESILTYNSQRELVPKKDENGKELKKLKLNFSIFEEGNYGKNVSFTIPQSKEQRENKEKKRYVANGKIYYASENLQSFVQKTEKQSEQVLEMADDMPF
Ga0212030_100001619	F007114	N/A	MINDAAWEKLKKQIEYHLKEDSNLTDIKINYQIKEPKYGTKNYLNLSVAVN
Ga0212030_100001622	F013571	N/A	MEINLILLMPDAMMLGFQYHEPEKGFDFSEVNLYLAFFQIQFRW