Scaffold Ga0232637_10010239

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0232637_10010239

Scaffold Ga0232637_10010239

Overview

Basic Information
Taxon OID	3300021980 Open in IMG/M
Scaffold ID	Ga0232637_10010239 Open in IMG/M
Source Dataset Name	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Burke_FS924 _150kmer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3882
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location Name	Burke vent field, Mariana back arc basin
Coordinates	Lat. (^o)	18.182568	Long. (^o)	144.719893	Alt. (m)		Depth (m)	3630
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0232637_100102395	F003091	AGGAG	MTMLPRKPITKPGEGEQREKYLTQERYLEERYQISVGLKGPKRLEGEEFEDYKVRMKAENGLLHEYLRGVLIKKVMNKIGN

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