Scaffold Ga0232641_1309110

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0232641_1309110

Scaffold Ga0232641_1309110

Overview

Basic Information
Taxon OID	3300021979 Open in IMG/M
Scaffold ID	Ga0232641_1309110 Open in IMG/M
Source Dataset Name	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS926 _150kmer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	599
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location Name	Hafa Adai vent field, Mariana back arc basin
Coordinates	Lat. (^o)	16.96131294	Long. (^o)	144.8678188	Alt. (m)		Depth (m)	3277
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034604	Metagenome	174	Y
F090512	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0232641_13091102	F034604	AGAAG	MIKVINIEGENIIIDFAGAPFWKYYVLQLYFLICHRKKLVDYTEVT
Ga0232641_13091103	F090512	GAG	MKIRYIIGISYLSYIGMMGGSVIVEAVVIGLVLGMYDFLFNDRIV

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