Scaffold Ga0232646_1016410

Overview

Basic Information

• Taxon OID: 3300021978
• Scaffold ID: Ga0232646_1016410
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Perseverance_CTD_V16A_01_btl17 _150kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2809
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Perseverance vent field water column
• Coordinates
  • Lat. (^o): 15.47990499
  • Long. (^o): 144.50763029
  • Depth (m): 3625

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003285	Metagenome / Metatranscriptome	496	Y
F061282	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0232646_10164101	F061282	N/A	ATRGIPLLKKPPKGLVMKRFGGIDVFALDPTYFHKSRLGKKKYTRYSGYVGEDEAGEYIRAFARKYPKKPIIVMDSQTGCMQYLRHGS
Ga0232646_10164103	F003285	GAGG	MPEQESIHQLQTEIQTLKIKDEFRTKELDALMEKLSDTSSKLNALSENIGRLLAGQELHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRISSDISLLYKKVESLERWRWITIGVATVIAWLLTNIIPKFLSN