Scaffold Ga0232639_1034920

Overview

Basic Information

• Taxon OID: 3300021977
• Scaffold ID: Ga0232639_1034920
• Source Dataset Name: Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS925 _150kmer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1880
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location

• Location Name: Hafa Adai vent field, Mariana back arc basin
• Coordinates
  • Lat. (^o): 16.96173128
  • Long. (^o): 144.86920936
  • Depth (m): 3278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006364	Metagenome / Metatranscriptome	375	Y
F012070	Metagenome	284	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0232639_10349201	F006364	GAG	MELDNDTRKMRIINYLDYMDDKALQEIAAALYNLSVRRREVKKRKELVNATGK
Ga0232639_10349204	F012070	GGA	MPIEIKMIEAANESYDDYILYEILCDYCDKEYTIKYMMNKRPKQSIECCPFCSNLIEEPAEIIDDEEIGWD