Scaffold Ga0222719_10354310

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10354310
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 930
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003805	Metagenome / Metatranscriptome	467	Y
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_103543101	F003805	N/A	HPILRGRSMRPIEHSTESSFHKAANDKWLVDLFNKQDYRALLEAALILNTLHQLERTKAAWAIREAADNLAEQFGLDRDSA
Ga0222719_103543102	F043896	GGAGG	VSKQIADWARQSWGEVIVDRARADLLDKLYFWDGRDKQDHPLHGTYTGLYRQYTAN
Ga0222719_103543103	F017122	N/A	MEVTPFQEQLDPELRLGEGRSRTCSANAMLFELKIWLPGQGAMRDLVRAESLQQAIQFAQNRYPNCKIEVPSTAAKKPKLVRSTRGPKERARQNLRIVEAKREQTDC
Ga0222719_103543104	F006109	N/A	RQMTRYVVMVEDRWVTAVYDSGKGIGFTRSQEDASSWVTYERAVAAARTVAQSCNCSAAVHSVDEPAYPSSWK