Scaffold Ga0222719_10164729

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10164729
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1550
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003835	Metagenome / Metatranscriptome	466	Y
F045652	Metagenome / Metatranscriptome	152	N
F061284	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_101647293	F045652	N/A	LKPTHKVCTKCKRERPIEQYNKLIRGRGGRRAQCKRCDQRYAEQRGLKVPQEPSEYTLNKQTMMNHMYIHFGWWESKMTSIERDQRHRDMRKYYKPEQKDKLK
Ga0222719_101647294	F003835	N/A	MKIDLKIRNQIAQLIVDMNIGESKPIRKHEMVPIIKEVNDTSLIGHAIRFVKNNNGDVVALKKYRKTAIEKRFETNT
Ga0222719_101647295	F061284	N/A	MNYDDYAKFEEIAFDHLLKKYGWKIHTTPRYALIDGVATKNGEITHIVEFKSRNESFESMERFGTYLISYDKILNGIEMSRMMCVPFVLIVYLIRDGIVIGVELGDEYGVGVPMEIQETRTQKSIDGGEAIRRNAFIDIEKFHIL