Basic Information | |
---|---|
Taxon OID | 3300021964 Open in IMG/M |
Scaffold ID | Ga0222719_10099480 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2127 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 37.495 | Long. (o) | -122.0933 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004856 | Metagenome / Metatranscriptome | 421 | Y |
F020816 | Metagenome / Metatranscriptome | 222 | N |
F035272 | Metagenome / Metatranscriptome | 172 | N |
F067760 | Metagenome / Metatranscriptome | 125 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0222719_100994802 | F067760 | N/A | MRVRRIDMFIMRKYGDYCDEALRYKEFQKTFQAWKDDNIISLVKEYKEYRRILRYGS |
Ga0222719_100994805 | F004856 | GGAGG | MSDWIEGTKPKYIEARYSAYLSWDLEELGIDWDEVEDWDLQRADLEITFKDGTKQNYENWQDLDIDYKHNFEEVLILDEGWDKVEGLNXWKNINVFMIDQSMNK |
Ga0222719_100994806 | F020816 | AGCAG | MMMGDNMKVYEITVSTTVQIDSVDDYAESKEHAIDIMWDRWDVYEDDLRITNVKVWEEDDEXLDRRN |
Ga0222719_100994808 | F035272 | AGGAGG | MMTYKQWCDFRELLNILHIEVESKLCDVKVEEAFDDVWDMVDEIDTTQEITXTNINNFTM |
⦗Top⦘ |