Scaffold Ga0222719_10023622

Overview

Basic Information

• Taxon OID: 3300021964
• Scaffold ID: Ga0222719_10023622
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4888
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.495
  • Long. (^o): -122.0933
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021020	Metagenome / Metatranscriptome	221	Y
F034945	Metagenome / Metatranscriptome	173	Y
F042350	Metagenome / Metatranscriptome	158	Y
F090460	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222719_1002362210	F034945	AGGAG	MGDRANVGIRGTDGNTLYLYLHWGGTDRHEIVANALAHAMNRDEDESYFTRIFISRVIDRDWDKETGVGLSVNKLSAMGDGYDIPIYNYTTKKVELHEEYWENGKGLAIYSDVEYPRDMYLAEYAVRGVGSYV
Ga0222719_1002362212	F021020	AGGAGG	MKTISLNNTIMTNNYDLNIWDRRGYETEYEEEGWAIDVYQYDYLGAPYGSGTHMSDYTITLTPTEAKRLTLGWGSDLGGDYTPDSDFWLDKDSFFDTYTDIPERVANLLWSLPDYEQKLDNTFL
Ga0222719_100236224	F042350	AGGAG	VPGRESEYMRGYLSGVAAMMNLISSDKVKRLDKTNVLQYARELVEAQKEKGTPL
Ga0222719_100236227	F090460	AGGAG	MVNDKFSDKEYWEGIRDACEYFKDELGIEDATDTTLYQQATQELELV