NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222719_10001151

Scaffold Ga0222719_10001151


Overview

Basic Information
Taxon OID3300021964 Open in IMG/M
Scaffold IDGa0222719_10001151 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_34D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26001
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (94.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.495Long. (o)-122.0933Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039049Metagenome / Metatranscriptome164N
F040080Metagenome162Y
F052272Metagenome / Metatranscriptome143Y
F061813Metagenome131N
F073281Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0222719_1000115113F061813GGAMMTISNENKTRVDYLVHKQVTEILALVKQASEKLNDTGDVESDSLDNASSHLKCGIDMLDHYLRANA
Ga0222719_1000115114F073281GAGGMRPKTIHHPEALADWRANDEKPYTFSGETNNASTREHSTHDNKVSKEQTKLEGLLARRLKDAIEQETRKRGEVRKEGEA
Ga0222719_1000115117F040080AGGAMKTLSEFKTDLTTLRTDLNATTYRVEKVQELLSDLVEKLDGLYDQSVSNKDQAVDLVRAADDLKPRQQDRRLFSSHYRMLAILNEYGVMHREHVARLLGVKDHTVTQMLHVCRHHGIADLKTRKGVVSLNGLADGVSDNTNFKI
Ga0222719_1000115119F052272GGAGMKTETTLNFTAEQLNELKRIVDTIGWATRDEKSGHIDAYVSENRVKFAKDLAGLLGRMDTAAIVGTSEGI
Ga0222719_1000115120F039049N/AMNLLPQTQKKRELSSQQRQFLDALFENNGNFSVACEVAGYSKGSIGHLKESLADEIIERSRSILAGGAIKAANKLVATIDAPEIERGDNIRLQAAESLLNRVGLGKQETHNHNVQALHGVVLLPPKKEMVVDSQ
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