Scaffold Ga0222712_10176463

Overview

Basic Information

• Taxon OID: 3300021963
• Scaffold ID: Ga0222712_10176463
• Source Dataset Name: Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1419
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.1516
  • Long. (^o): -121.6883
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F028166	Metagenome / Metatranscriptome	192	Y
F078716	Metagenome / Metatranscriptome	116	N
F088905	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222712_101764632	F078716	N/A	MSENGTGTPTAPVSEPSGAVTSRETPRKYPKQGTRSGIKIDQNKHGIRRETSLDPKPPRKGRPKKV
Ga0222712_101764633	F001280	GAGG	MCIECGCQAFGSETGIVPVTITDVSRDGESGLTLNMTSTPEQTRQFINE
Ga0222712_101764634	F088905	N/A	MSENKDIDMVDGLPVAETVVAEEAKPKAETPAPAPVANAVTDYWANAWANRGV
Ga0222712_101764635	F028166	AGGAG	MTNGNDLTGFNEVKAGDTNNLDLNPTGQAPASAFPSTDVSTQDGSGLGQNGK