NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222712_10141626

Scaffold Ga0222712_10141626


Overview

Basic Information
Taxon OID3300021963 Open in IMG/M
Scaffold IDGa0222712_10141626 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_657D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1633
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.1516Long. (o)-121.6883Alt. (m)Depth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016142Metagenome / Metatranscriptome249Y
F045692Metagenome / Metatranscriptome152Y
F053230Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0222712_101416261F016142N/ADLGYLVAPDGMRLADRPIDMDADLDESAEQRSVLGEPVCTCGSFQRQLNHLAGLQEEISGYQPACIHLTWFNKYRELLCKRTEVRNACPAYAPDKCVAWWYAPPTDAASDGRFVLLHTKYGAQAPLTHWRTYKPKEVFTQDDAWTLFDNMLESGYVPFPGVALPQLKTAIKHDQ
Ga0222712_101416265F053230N/AMFESILAAVLPAVKDLLWTAAAALLAYALNKLQSHFQHI
Ga0222712_101416266F045692N/AMTQITHTKLKELNIIQLYEHYGALERSLPLLTPESLELAQAELESCAYLR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.